STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458073Uncharacterized protein. (1021 aa)    
Predicted Functional Partners:
rbm42
RNA binding motif protein 42.
      
 0.630
yars1
Tyrosine--tRNA ligase.
  
 
 0.597
nubpl
Nucleotide binding protein-like.
   
  
 0.563
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
      
 0.503
LOC103464785
Uncharacterized protein.
  
     0.502
LOC103474066
Serine/threonine-protein phosphatase.
   
   0.497
PPP6C
Serine/threonine-protein phosphatase.
   
   0.497
dtd1
D-aminoacyl-tRNA deacylase.
      
 0.465
tmem9
Transmembrane protein 9.
      
 0.461
tmem9b
TMEM9 domain family, member B.
      
 0.461
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.