STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d8Rab-GAP TBC domain-containing protein. (1124 aa)    
Predicted Functional Partners:
MZT1
Mitotic spindle organizing protein 1.
   
  
 0.668
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
      
 0.622
gak
Cyclin G associated kinase.
   
 
  0.622
gapvd1
GTPase activating protein and VPS9 domains 1.
   
 
 0.602
TMEM179
Transmembrane protein 179.
      
 0.590
cpd
Carboxypeptidase D, a.
     
  0.563
ankfy1
Ankyrin repeat and FYVE domain containing 1.
   
 
 0.537
tbc1d23
TBC1 domain family, member 23.
   
  
 0.536
zbtb34
Zinc finger and BTB domain containing 34.
      
 0.532
TBC1D13
TBC1 domain family member 13.
      
 0.530
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.