STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vps13dVacuolar protein sorting 13 homolog D. (3861 aa)    
Predicted Functional Partners:
LOC103464449
Aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase).
      
 0.831
ENSPREP00000021240
Proline rich 16.
      
 0.719
kiaa2013
Si:dkeyp-104h9.5.
      
 0.701
ENSPREP00000003070
Immunoglobin superfamily, member 21b.
      
 0.699
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
 0.614
ENSPREP00000020943
ARS2 domain-containing protein.
      
 0.603
srrt
Serrate RNA effector molecule homolog (Arabidopsis).
      
 0.603
park7
Parkinson protein 7.
      
 0.601
miga2
Mitoguardin 2.
      
 0.597
clg9h12orf65
Si:ch211-275j6.5.
      
 0.589
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.