LOC103474694 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103474694

Uncharacterized protein. (772 aa)

Predicted Functional Partners:

Scoc

0.711

LOC103463814

0.711

tnfsf12

0.698

heatr5b

0.596

LOC103474597

0.587

pop4

0.584

zfand5

0.582

LOC103463616

0.582

LOC103473941

0.582

tnfaip8l1

0.576

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103463616	LOC103474694	ENSPREP00000014256	ENSPREP00000003311	Zgc:77486.	Uncharacterized protein.	0.582
LOC103463814	LOC103474694	ENSPREP00000002782	ENSPREP00000003311	Short coiled-coil protein a.	Uncharacterized protein.	0.711
LOC103473941	LOC103474694	ENSPREP00000029906	ENSPREP00000003311	Uncharacterized protein.	Uncharacterized protein.	0.582
LOC103474597	LOC103474694	ENSPREP00000033219	ENSPREP00000003311	Uncharacterized protein.	Uncharacterized protein.	0.587
LOC103474597	heatr5b	ENSPREP00000033219	ENSPREP00000011454	Uncharacterized protein.	HEAT repeat containing 5B.	0.506
LOC103474694	LOC103463616	ENSPREP00000003311	ENSPREP00000014256	Uncharacterized protein.	Zgc:77486.	0.582
LOC103474694	LOC103463814	ENSPREP00000003311	ENSPREP00000002782	Uncharacterized protein.	Short coiled-coil protein a.	0.711
LOC103474694	LOC103473941	ENSPREP00000003311	ENSPREP00000029906	Uncharacterized protein.	Uncharacterized protein.	0.582
LOC103474694	LOC103474597	ENSPREP00000003311	ENSPREP00000033219	Uncharacterized protein.	Uncharacterized protein.	0.587
LOC103474694	Scoc	ENSPREP00000003311	ENSPREP00000000975	Uncharacterized protein.	Short coiled-coil protein.	0.711
LOC103474694	heatr5b	ENSPREP00000003311	ENSPREP00000011454	Uncharacterized protein.	HEAT repeat containing 5B.	0.596
LOC103474694	pop4	ENSPREP00000003311	ENSPREP00000033061	Uncharacterized protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.584
LOC103474694	tnfaip8l1	ENSPREP00000003311	ENSPREP00000025915	Uncharacterized protein.	Tumor necrosis factor, alpha-induced protein 8-like 1.	0.576
LOC103474694	tnfsf12	ENSPREP00000003311	ENSPREP00000016421	Uncharacterized protein.	TNF superfamily member 12; Belongs to the tumor necrosis factor family.	0.698
LOC103474694	zfand5	ENSPREP00000003311	ENSPREP00000013381	Uncharacterized protein.	Zinc finger, AN1-type domain 5a.	0.582
Scoc	LOC103474694	ENSPREP00000000975	ENSPREP00000003311	Short coiled-coil protein.	Uncharacterized protein.	0.711
heatr5b	LOC103474597	ENSPREP00000011454	ENSPREP00000033219	HEAT repeat containing 5B.	Uncharacterized protein.	0.506
heatr5b	LOC103474694	ENSPREP00000011454	ENSPREP00000003311	HEAT repeat containing 5B.	Uncharacterized protein.	0.596
pop4	LOC103474694	ENSPREP00000033061	ENSPREP00000003311	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	Uncharacterized protein.	0.584
tnfaip8l1	LOC103474694	ENSPREP00000025915	ENSPREP00000003311	Tumor necrosis factor, alpha-induced protein 8-like 1.	Uncharacterized protein.	0.576