STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468850Transmembrane channel-like protein. (796 aa)    
Predicted Functional Partners:
Tmc3
Si:dkey-15b23.3.
      
 0.580
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
    
 
 0.538
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
    
 0.537
efhb
Uncharacterized protein.
    
 
 0.505
lrrc18
Leucine rich repeat containing 18b.
    
 0.498
kntc1
Kinetochore associated 1.
      
 0.496
LOC103468867
Uncharacterized protein.
    
 0.492
LOC103468869
Arf-GAP domain-containing protein.
    
 
 0.480
MYADML2
Myeloid associated differentiation marker like 2.
      
 0.472
myadml2
Myeloid-associated differentiation marker-like 2.
      
 0.472
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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