Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c9orf72Zgc:100846. (298 aa)    
Predicted Functional Partners:
wdr41
WD repeat domain 41.
    
 0.997
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
  
 
 0.994
LOC103462186
UDENN FLCN/SMCR8-type domain-containing protein.
    
 0.992
RAB39B
RAB39B, member RAS oncogene family.
    
 0.992
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
    
 0.992
rb1cc1
RB1-inducible coiled-coil 1.
    
 0.990
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.978
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.975
rab8a
RAB8A, member RAS oncogene family.
    
 0.935
sod1
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
      
 0.923
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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