ust protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

ust

Uronyl 2-sulfotransferase a. (406 aa)

Predicted Functional Partners:

LOC103478412

0.645

cmtr2

0.618

chst11

0.614

cmtr1

0.586

CHST15

0.545

LOC103476751

0.545

dse

0.513

ecpas

0.503

lmf2

0.490

acss3

0.458

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHST15	chst11	ENSPREP00000010419	ENSPREP00000025032	Carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15.	Carbohydrate sulfotransferase.	0.758
CHST15	ust	ENSPREP00000010419	ENSPREP00000003333	Carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15.	Uronyl 2-sulfotransferase a.	0.545
LOC103476751	chst11	ENSPREP00000016910	ENSPREP00000025032	Sulfotransferase; Belongs to the sulfotransferase 1 family.	Carbohydrate sulfotransferase.	0.602
LOC103476751	ust	ENSPREP00000016910	ENSPREP00000003333	Sulfotransferase; Belongs to the sulfotransferase 1 family.	Uronyl 2-sulfotransferase a.	0.545
LOC103478412	ust	ENSPREP00000014097	ENSPREP00000003333	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	Uronyl 2-sulfotransferase a.	0.645
acss3	ust	ENSPREP00000033106	ENSPREP00000003333	Acyl-CoA synthetase short chain family member 3.	Uronyl 2-sulfotransferase a.	0.458
chst11	CHST15	ENSPREP00000025032	ENSPREP00000010419	Carbohydrate sulfotransferase.	Carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15.	0.758
chst11	LOC103476751	ENSPREP00000025032	ENSPREP00000016910	Carbohydrate sulfotransferase.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.602
chst11	dse	ENSPREP00000025032	ENSPREP00000002737	Carbohydrate sulfotransferase.	Dermatan sulfate epimerase.	0.675
chst11	ust	ENSPREP00000025032	ENSPREP00000003333	Carbohydrate sulfotransferase.	Uronyl 2-sulfotransferase a.	0.614
cmtr1	ust	ENSPREP00000002095	ENSPREP00000003333	Cap methyltransferase 1.	Uronyl 2-sulfotransferase a.	0.586
cmtr2	ust	ENSPREP00000002274	ENSPREP00000003333	Cap methyltransferase 2.	Uronyl 2-sulfotransferase a.	0.618
dse	chst11	ENSPREP00000002737	ENSPREP00000025032	Dermatan sulfate epimerase.	Carbohydrate sulfotransferase.	0.675
dse	ust	ENSPREP00000002737	ENSPREP00000003333	Dermatan sulfate epimerase.	Uronyl 2-sulfotransferase a.	0.513
ecpas	lmf2	ENSPREP00000017113	ENSPREP00000007727	Ecm29 proteasome adaptor and scaffold.	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	0.605
ecpas	ust	ENSPREP00000017113	ENSPREP00000003333	Ecm29 proteasome adaptor and scaffold.	Uronyl 2-sulfotransferase a.	0.503
lmf2	ecpas	ENSPREP00000007727	ENSPREP00000017113	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	Ecm29 proteasome adaptor and scaffold.	0.605
lmf2	ust	ENSPREP00000007727	ENSPREP00000003333	Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.	Uronyl 2-sulfotransferase a.	0.490
ust	CHST15	ENSPREP00000003333	ENSPREP00000010419	Uronyl 2-sulfotransferase a.	Carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15.	0.545
ust	LOC103476751	ENSPREP00000003333	ENSPREP00000016910	Uronyl 2-sulfotransferase a.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.545