STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcloPiccolo presynaptic cytomatrix protein a. (3491 aa)    
Predicted Functional Partners:
Pclo
Uncharacterized protein.
 
      0.734
ENSPREP00000012584
Bassoon (presynaptic cytomatrix protein) b.
   
 0.697
bsn
Uncharacterized protein.
   
 0.697
Unc79
Uncharacterized protein.
   
 0.676
rabac1
PRA1 family protein.
    
 
 0.578
LOC103458407
Rap guanine nucleotide exchange factor (GEF) 4.
    
 
 0.534
tspan11
Tetraspanin.
     
 0.503
LOC103461037
RAN binding protein 2.
    
  0.491
pdpk1
3-phosphoinositide dependent protein kinase 1b.
    
 
 0.483
LOC103480119
RNA binding motif protein 4.1.
    
 0.478
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.