STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
herpud1Homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1. (382 aa)    
Predicted Functional Partners:
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
   
 
 0.637
amfr
Autocrine motility factor receptor b.
   
 
 0.632
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 
 0.548
LOC103477731
Activating transcription factor 4a.
   
 
 0.515
edem1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
   
  
 0.495
LOC103460384
Glutathione S-transferase theta 2; Belongs to the GST superfamily.
      
 0.468
mbtps2
Membrane-bound transcription factor peptidase, site 2.
      
 0.461
LOC103465826
DnaJ heat shock protein family (Hsp40) member B9a.
   
  
 0.457
LOC103459456
DnaJ heat shock protein family (Hsp40) member B9b.
   
  
 0.457
znf622
Zinc finger protein 622.
      
 0.455
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.