STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458078Uncharacterized protein. (1083 aa)    
Predicted Functional Partners:
lrfn5
Leucine rich repeat and fibronectin type III domain containing 5a.
   
 0.571
ino80d
INO80 complex subunit Da.
      
 0.494
TMEM19
Transmembrane protein 19.
      
 0.491
LOC103471469
Transmembrane protein 216.
      
 0.490
ENSPREP00000009332
Solute carrier family 30 member 5.
   
 
 0.475
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
      
 0.468
scarf1
Scavenger receptor class F, member 1.
    
 
 0.468
LOC103457890
Leucine rich repeat and fibronectin type III domain containing 5b.
   
 0.452
rorb
RAR-related orphan receptor B.
   
  
 0.414
PRAG1
PEAK1 related, kinase-activating pseudokinase 1.
      
 0.409
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.