STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
casp6Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (312 aa)    
Predicted Functional Partners:
LOC103478931
Uncharacterized protein; Belongs to the peptidase C14A family.
   
0.986
LOC103459939
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
0.986
casp9
Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
0.984
lmnb1
Lamin B1; Belongs to the intermediate filament family.
   
 0.972
LOC103473032
Uncharacterized protein; Belongs to the intermediate filament family.
   
 0.972
lmna
Lamin A; Belongs to the intermediate filament family.
   
 0.972
lmnb2
Lamin B2; Belongs to the intermediate filament family.
   
 0.972
LOC103478932
Caspase 20, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
0.936
LOC108167062
Uncharacterized protein; Belongs to the peptidase C14A family.
   
0.936
LOC103462148
Uncharacterized protein.
    
 0.913
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.