LOC103468063 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103468063

Death effector domain containing. (399 aa)

Predicted Functional Partners:

cnot11

0.722

cnot10

0.721

cnot6l

0.603

parn

0.602

cnot9

0.602

LOC103470954

0.597

cnot8

0.596

SART1

0.590

rexo2

0.561

eapp

0.546

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103468063	LOC103470954	ENSPREP00000003425	ENSPREP00000032657	Death effector domain containing.	CCR4-NOT transcription complex, subunit 7.	0.597
LOC103468063	SART1	ENSPREP00000003425	ENSPREP00000000100	Death effector domain containing.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.590
LOC103468063	cnot10	ENSPREP00000003425	ENSPREP00000027156	Death effector domain containing.	CCR4-NOT transcription complex, subunit 10.	0.721
LOC103468063	cnot11	ENSPREP00000003425	ENSPREP00000017043	Death effector domain containing.	CCR4-NOT transcription complex, subunit 11.	0.722
LOC103468063	cnot6l	ENSPREP00000003425	ENSPREP00000005095	Death effector domain containing.	CCR4-NOT transcription complex, subunit 6-like.	0.603
LOC103468063	cnot8	ENSPREP00000003425	ENSPREP00000019670	Death effector domain containing.	CCR4-NOT transcription complex, subunit 8.	0.596
LOC103468063	cnot9	ENSPREP00000003425	ENSPREP00000001000	Death effector domain containing.	CCR4-NOT transcription complex subunit 9.	0.602
LOC103468063	eapp	ENSPREP00000003425	ENSPREP00000004222	Death effector domain containing.	E2f-associated phosphoprotein.	0.546
LOC103468063	parn	ENSPREP00000003425	ENSPREP00000000165	Death effector domain containing.	Poly(A)-specific ribonuclease (deadenylation nuclease).	0.602
LOC103468063	rexo2	ENSPREP00000003425	ENSPREP00000024328	Death effector domain containing.	Small fragment nuclease.	0.561
LOC103470954	LOC103468063	ENSPREP00000032657	ENSPREP00000003425	CCR4-NOT transcription complex, subunit 7.	Death effector domain containing.	0.597
LOC103470954	cnot10	ENSPREP00000032657	ENSPREP00000027156	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 10.	0.976
LOC103470954	cnot11	ENSPREP00000032657	ENSPREP00000017043	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 11.	0.980
LOC103470954	cnot6l	ENSPREP00000032657	ENSPREP00000005095	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 6-like.	0.985
LOC103470954	cnot8	ENSPREP00000032657	ENSPREP00000019670	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex, subunit 8.	0.902
LOC103470954	cnot9	ENSPREP00000032657	ENSPREP00000001000	CCR4-NOT transcription complex, subunit 7.	CCR4-NOT transcription complex subunit 9.	0.986
LOC103470954	parn	ENSPREP00000032657	ENSPREP00000000165	CCR4-NOT transcription complex, subunit 7.	Poly(A)-specific ribonuclease (deadenylation nuclease).	0.509
SART1	LOC103468063	ENSPREP00000000100	ENSPREP00000003425	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Death effector domain containing.	0.590
cnot10	LOC103468063	ENSPREP00000027156	ENSPREP00000003425	CCR4-NOT transcription complex, subunit 10.	Death effector domain containing.	0.721
cnot10	LOC103470954	ENSPREP00000027156	ENSPREP00000032657	CCR4-NOT transcription complex, subunit 10.	CCR4-NOT transcription complex, subunit 7.	0.976