LOC103478952 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103478952

G_PROTEIN_RECEP_F3_4 domain-containing protein. (1281 aa)

Predicted Functional Partners:

LOC103457355

0.554

rgs7

0.554

LOC103458511

0.554

LOC103462170

0.552

gnb5

0.552

rgs11

0.503

LOC103481632

0.503

LOC103468274

0.503

gpr156

0.441

ATE1

0.418

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATE1	LOC103478952	ENSPREP00000013761	ENSPREP00000003489	Arginyl-tRNA--protein transferase 1; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Belongs to the R-transferase family.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.418
LOC103457355	LOC103462170	ENSPREP00000014988	ENSPREP00000007905	Regulator of G protein signaling 6.	Guanine nucleotide binding protein (G protein), beta 5b.	0.813
LOC103457355	LOC103468274	ENSPREP00000014988	ENSPREP00000016895	Regulator of G protein signaling 6.	Regulator of G protein signaling 9a.	0.493
LOC103457355	LOC103478952	ENSPREP00000014988	ENSPREP00000003489	Regulator of G protein signaling 6.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.554
LOC103457355	LOC103481632	ENSPREP00000014988	ENSPREP00000013749	Regulator of G protein signaling 6.	Regulator of G protein signaling 9b.	0.493
LOC103457355	gnb5	ENSPREP00000014988	ENSPREP00000021759	Regulator of G protein signaling 6.	Guanine nucleotide binding protein (G protein), beta 5a.	0.813
LOC103457355	rgs11	ENSPREP00000014988	ENSPREP00000005058	Regulator of G protein signaling 6.	Regulator of G protein signaling 11.	0.508
LOC103458511	LOC103462170	ENSPREP00000028961	ENSPREP00000007905	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta 5b.	0.813
LOC103458511	LOC103468274	ENSPREP00000028961	ENSPREP00000016895	Uncharacterized protein.	Regulator of G protein signaling 9a.	0.511
LOC103458511	LOC103478952	ENSPREP00000028961	ENSPREP00000003489	Uncharacterized protein.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.554
LOC103458511	LOC103481632	ENSPREP00000028961	ENSPREP00000013749	Uncharacterized protein.	Regulator of G protein signaling 9b.	0.493
LOC103458511	gnb5	ENSPREP00000028961	ENSPREP00000021759	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta 5a.	0.813
LOC103458511	rgs11	ENSPREP00000028961	ENSPREP00000005058	Uncharacterized protein.	Regulator of G protein signaling 11.	0.514
LOC103462170	LOC103457355	ENSPREP00000007905	ENSPREP00000014988	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 6.	0.813
LOC103462170	LOC103458511	ENSPREP00000007905	ENSPREP00000028961	Guanine nucleotide binding protein (G protein), beta 5b.	Uncharacterized protein.	0.813
LOC103462170	LOC103468274	ENSPREP00000007905	ENSPREP00000016895	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 9a.	0.822
LOC103462170	LOC103478952	ENSPREP00000007905	ENSPREP00000003489	Guanine nucleotide binding protein (G protein), beta 5b.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.552
LOC103462170	LOC103481632	ENSPREP00000007905	ENSPREP00000013749	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 9b.	0.822
LOC103462170	gpr156	ENSPREP00000007905	ENSPREP00000001062	Guanine nucleotide binding protein (G protein), beta 5b.	G protein-coupled receptor 156.	0.489
LOC103462170	rgs11	ENSPREP00000007905	ENSPREP00000005058	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 11.	0.822