STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prpf19Pre-mRNA processing factor 19. (458 aa)    
Predicted Functional Partners:
plrg1
Pleiotropic regulator 1.
   
0.999
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.999
xab2
XPA binding protein 2.
   
 0.999
aqr
Aquarius intron-binding spliceosomal factor.
    
 0.999
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.999
ctnnbl1
Catenin, beta like 1.
   
 0.999
ZNF830
Zinc finger protein 830.
    
 0.998
cwc15
CWC15 spliceosome associated protein homolog.
    
 0.998
ppie
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
   
 0.997
LOC103460347
ISY1 splicing factor homolog.
    
 0.997
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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