SAMD12 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SAMD12

Sterile alpha motif domain containing 12. (203 aa)

Predicted Functional Partners:

stard7

0.659

rapgef2

0.644

brca1

0.636

ENSPREP00000001825

0.597

MARCHF6

0.597

Ksr1

0.439

ENSPREP00000001309

0.439

ksr2

0.439

cmbl

0.408

ctnnd2

0.407

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000001309	Ksr1	ENSPREP00000001309	ENSPREP00000001282	Uncharacterized protein.	Protein kinase domain-containing protein.	0.899
ENSPREP00000001309	SAMD12	ENSPREP00000001309	ENSPREP00000003527	Uncharacterized protein.	Sterile alpha motif domain containing 12.	0.439
ENSPREP00000001825	SAMD12	ENSPREP00000001825	ENSPREP00000003527	RING-CH-type domain-containing protein.	Sterile alpha motif domain containing 12.	0.597
ENSPREP00000001825	cmbl	ENSPREP00000001825	ENSPREP00000021059	RING-CH-type domain-containing protein.	Carboxymethylenebutenolidase homolog (Pseudomonas).	0.693
ENSPREP00000001825	ctnnd2	ENSPREP00000001825	ENSPREP00000001597	RING-CH-type domain-containing protein.	Catenin (cadherin-associated protein), delta 2b.	0.625
ENSPREP00000001825	rapgef2	ENSPREP00000001825	ENSPREP00000011362	RING-CH-type domain-containing protein.	Rap guanine nucleotide exchange factor (GEF) 2.	0.708
ENSPREP00000001825	stard7	ENSPREP00000001825	ENSPREP00000015370	RING-CH-type domain-containing protein.	StAR-related lipid transfer (START) domain containing 7.	0.689
Ksr1	ENSPREP00000001309	ENSPREP00000001282	ENSPREP00000001309	Protein kinase domain-containing protein.	Uncharacterized protein.	0.899
Ksr1	SAMD12	ENSPREP00000001282	ENSPREP00000003527	Protein kinase domain-containing protein.	Sterile alpha motif domain containing 12.	0.439
MARCHF6	SAMD12	ENSPREP00000021101	ENSPREP00000003527	Membrane associated ring-CH-type finger 6.	Sterile alpha motif domain containing 12.	0.597
MARCHF6	cmbl	ENSPREP00000021101	ENSPREP00000021059	Membrane associated ring-CH-type finger 6.	Carboxymethylenebutenolidase homolog (Pseudomonas).	0.693
MARCHF6	ctnnd2	ENSPREP00000021101	ENSPREP00000001597	Membrane associated ring-CH-type finger 6.	Catenin (cadherin-associated protein), delta 2b.	0.625
MARCHF6	rapgef2	ENSPREP00000021101	ENSPREP00000011362	Membrane associated ring-CH-type finger 6.	Rap guanine nucleotide exchange factor (GEF) 2.	0.708
MARCHF6	stard7	ENSPREP00000021101	ENSPREP00000015370	Membrane associated ring-CH-type finger 6.	StAR-related lipid transfer (START) domain containing 7.	0.689
SAMD12	ENSPREP00000001309	ENSPREP00000003527	ENSPREP00000001309	Sterile alpha motif domain containing 12.	Uncharacterized protein.	0.439
SAMD12	ENSPREP00000001825	ENSPREP00000003527	ENSPREP00000001825	Sterile alpha motif domain containing 12.	RING-CH-type domain-containing protein.	0.597
SAMD12	Ksr1	ENSPREP00000003527	ENSPREP00000001282	Sterile alpha motif domain containing 12.	Protein kinase domain-containing protein.	0.439
SAMD12	MARCHF6	ENSPREP00000003527	ENSPREP00000021101	Sterile alpha motif domain containing 12.	Membrane associated ring-CH-type finger 6.	0.597
SAMD12	brca1	ENSPREP00000003527	ENSPREP00000033076	Sterile alpha motif domain containing 12.	Uncharacterized protein.	0.636
SAMD12	cmbl	ENSPREP00000003527	ENSPREP00000021059	Sterile alpha motif domain containing 12.	Carboxymethylenebutenolidase homolog (Pseudomonas).	0.408