STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zcchc24CCHC-type domain-containing protein. (160 aa)    
Predicted Functional Partners:
lacc1
Laccase (multicopper oxidoreductase) domain containing 1.
      
 0.602
coq9
Ubiquinone biosynthesis protein; Lipid-binding protein involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration.
      
 0.537
fam126a
Family with sequence similarity 126 member A.
      
 0.535
zbtb7a
Zinc finger and BTB domain containing 7a.
      
 0.525
rbm47
RNA binding motif protein 47.
    
 
 0.485
LOC103458630
Transmembrane protein 54a.
      
 0.461
LOC103472037
Transmembrane protein 54b.
      
 0.461
ENSPREP00000015378
Ig-like domain-containing protein.
      
 0.409
srpx
Sushi-repeat containing protein X-linked.
      
 0.403
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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