STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sash1SAM and SH3 domain containing 1a. (1155 aa)    
Predicted Functional Partners:
SAMD5
Sterile alpha motif domain containing 5.
 
    
 0.863
trmt11
tRNA methyltransferase 11 homolog.
      
 0.609
pex7
Peroxisomal biogenesis factor 7.
      
 0.606
NCSTN
Nicastrin.
      
 0.603
smad7
Mothers against decapentaplegic homolog.
      
 0.603
ficd
FIC domain containing.
      
 0.594
mtrf1l
Mitochondrial translational release factor 1-like.
      
 0.504
MAMDC2
MAM domain containing 2.
    
 
 0.465
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
    
   0.456
itpk1
Inositol-tetrakisphosphate 1-kinase b.
     
 0.429
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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