STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trub2TruB pseudouridine (psi) synthase family member 2. (338 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 0.985
Ngrn
Uncharacterized protein.
    
 0.976
rcc1l
RCC1 like.
    
 0.972
yars2
Tyrosine--tRNA ligase.
  
 
 0.963
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
  
 
 0.953
mterf3
Mitochondrial transcription termination factor 3.
   
 0.908
nop58
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.906
nop56
NOP56 ribonucleoprotein homolog.
   
 
 0.894
LOC103465136
RNA pseudouridine synthase D4.
  
 0.887
pus7l
Pseudouridine synthase 7 like.
   
  
 0.877
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.