STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAMD5Sterile alpha motif domain containing 5. (194 aa)    
Predicted Functional Partners:
sash1
SAM and SH3 domain containing 1a.
 
    
 0.863
lancl2
LanC lantibiotic synthetase component C-like 2 (bacterial).
      
 0.723
LOC103469004
Sterile alpha motif domain containing 14.
      
 0.664
ENSPREP00000003714
Uncharacterized protein.
      
 0.603
LOC103479376
Kelch repeat and BTB (POZ) domain containing 7.
      
 0.580
tmem175
Transmembrane protein 175.
      
 0.531
samd7
Sterile alpha motif domain containing 7.
      
 0.523
LOC103475546
Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.
     
 0.512
ENSPREP00000025046
Ras association (RalGDS/AF-6) and pleckstrin homology domains 1a.
     
 0.512
LOC103473918
Cytochrome P450, family 20, subfamily A, polypeptide 1.
      
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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