STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
def8Differentially expressed in FDCP 8 homolog. (440 aa)    
Predicted Functional Partners:
tcf25
Transcription factor 25 (basic helix-loop-helix).
 
    
 0.902
samsn1
SAM domain, SH3 domain and nuclear localisation signals 1a.
   
  
 0.727
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
      
 0.711
LOC103469015
ABI family, member 3a.
      
 0.706
pdcd5
Programmed cell death 5.
      
 0.684
znf276
Zinc finger protein 276.
      
 0.670
mc1r
Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.
      
 0.662
rrbp1
Ribosome binding protein 1a.
      
 0.660
ENSPREP00000016773
Melanocortin 5b receptor.
      
 0.656
uvrag
UV radiation resistance associated gene.
    
 
 0.648
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.