STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
adamts17ADAM metallopeptidase with thrombospondin type 1 motif, 17. (1067 aa)    
Predicted Functional Partners:
LOC103468234
ADAM metallopeptidase with thrombospondin type 1 motif, 10.
    
 0.524
adamts6
ADAM metallopeptidase with thrombospondin type 1 motif, 6.
    
 0.524
pofut2
Protein O-fucosyltransferase 2.
     
 0.511
usf1
Upstream transcription factor 1.
   
 
 0.479
lrig1
Leucine-rich repeats and immunoglobulin-like domains 1.
   
  
 0.462
psmd6
Proteasome 26S subunit, non-ATPase 6.
      
 0.459
usf2
BHLH domain-containing protein.
    
 
 0.430
ENSPREP00000013476
Upstream transcription factor 2, c-fos interacting.
    
 
 0.430
Adamtsl1
Uncharacterized protein.
     
 0.426
ENSPREP00000028922
Uncharacterized protein.
     
 0.426
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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