STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000003577TAP binding protein (tapasin), tandem duplicate 2. (424 aa)    
Predicted Functional Partners:
LOC103479782
Calreticulin.
    
 0.991
LOC103472929
Transporter associated with antigen processing, subunit type a.
   
 0.967
LOC103460927
Transporter associated with antigen processing, subunit type a.
   
 0.967
LOC103472572
Protein disulfide-isomerase.
    
 0.964
LOC103481747
Transporter associated with antigen processing, subunit type t, teleost specific.
   
 0.942
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
   
 0.928
LOC103464072
Calreticulin.
    
 0.919
ENSPREP00000008622
Protein disulfide isomerase family A, member 3.
    
 0.858
pdia4
Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family.
    
 0.858
rpa2
Replication protein A2.
   
 0.795
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.