STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464905LHFPL tetraspan subfamily member 5a. (224 aa)    
Predicted Functional Partners:
TMC1
Transmembrane channel-like protein.
   
 
 0.593
LOC103465658
Uncharacterized protein.
   
 0.552
pcdh15
Protocadherin-related 15a.
   
 0.552
LOC103481331
Uncharacterized protein.
   
 0.552
tmie
Transmembrane inner ear.
     
 0.544
cib3
Calcium and integrin binding family member 3.
   
 
 0.488
CIB2
Calcium and integrin binding family member 2.
   
 
 0.472
LOC103466575
Calcium and integrin binding family member 2.
   
 
 0.472
Cdh23
Uncharacterized protein.
   
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.