ccr9 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ccr9

Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family. (366 aa)

Predicted Functional Partners:

ENSPREP00000019776

0.996

LOC103479771

0.933

LOC103460846

0.901

apln

0.574

LOC103465012

0.539

LOC103469798

0.523

cd83

0.517

nts

0.502

rag2

0.468

LOC103464854

0.447

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000019776	LOC103460846	ENSPREP00000019776	ENSPREP00000013318	C-C motif chemokine.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.996
ENSPREP00000019776	LOC103464854	ENSPREP00000019776	ENSPREP00000000400	C-C motif chemokine.	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.953
ENSPREP00000019776	LOC103465012	ENSPREP00000019776	ENSPREP00000030428	C-C motif chemokine.	Ig-like domain-containing protein.	0.503
ENSPREP00000019776	LOC103469798	ENSPREP00000019776	ENSPREP00000003597	C-C motif chemokine.	SCY domain-containing protein.	0.767
ENSPREP00000019776	LOC103479771	ENSPREP00000019776	ENSPREP00000017702	C-C motif chemokine.	Chemokine (C-C motif) ligand 25a.	0.909
ENSPREP00000019776	ccr9	ENSPREP00000019776	ENSPREP00000003611	C-C motif chemokine.	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	0.996
LOC103460846	ENSPREP00000019776	ENSPREP00000013318	ENSPREP00000019776	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.996
LOC103460846	LOC103464854	ENSPREP00000013318	ENSPREP00000000400	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.447
LOC103460846	LOC103465012	ENSPREP00000013318	ENSPREP00000030428	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Ig-like domain-containing protein.	0.539
LOC103460846	LOC103469798	ENSPREP00000013318	ENSPREP00000003597	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	SCY domain-containing protein.	0.523
LOC103460846	LOC103479771	ENSPREP00000013318	ENSPREP00000017702	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) ligand 25a.	0.933
LOC103460846	apln	ENSPREP00000013318	ENSPREP00000017384	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Apelin.	0.574
LOC103460846	ccr9	ENSPREP00000013318	ENSPREP00000003611	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	0.901
LOC103460846	nts	ENSPREP00000013318	ENSPREP00000004949	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Neurotensin.	0.502
LOC103464854	ENSPREP00000019776	ENSPREP00000000400	ENSPREP00000019776	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	C-C motif chemokine.	0.953
LOC103464854	LOC103460846	ENSPREP00000000400	ENSPREP00000013318	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.447
LOC103464854	LOC103465012	ENSPREP00000000400	ENSPREP00000030428	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	Ig-like domain-containing protein.	0.407
LOC103464854	LOC103469798	ENSPREP00000000400	ENSPREP00000003597	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	SCY domain-containing protein.	0.774
LOC103464854	ccr9	ENSPREP00000000400	ENSPREP00000003611	Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	0.447
LOC103465012	ENSPREP00000019776	ENSPREP00000030428	ENSPREP00000019776	Ig-like domain-containing protein.	C-C motif chemokine.	0.503