ENSPREP00000003616 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000003616

Uncharacterized protein. (203 aa)

Predicted Functional Partners:

frmd6

0.788

frmd1

0.788

LOC103472833

0.781

LOC103464516

0.781

LOC103462170

0.781

gnb1

0.781

gnb3

0.781

gnb5

0.781

GNB4

0.781

LOC103475780

0.781

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000003616	GNB4	ENSPREP00000003616	ENSPREP00000022213	Uncharacterized protein.	G protein subunit beta 4.	0.781
ENSPREP00000003616	LOC103462170	ENSPREP00000003616	ENSPREP00000007905	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta 5b.	0.781
ENSPREP00000003616	LOC103464516	ENSPREP00000003616	ENSPREP00000006363	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.781
ENSPREP00000003616	LOC103472833	ENSPREP00000003616	ENSPREP00000001967	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	0.781
ENSPREP00000003616	LOC103475780	ENSPREP00000003616	ENSPREP00000033242	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.781
ENSPREP00000003616	frmd1	ENSPREP00000003616	ENSPREP00000033562	Uncharacterized protein.	FERM domain-containing protein.	0.788
ENSPREP00000003616	frmd6	ENSPREP00000003616	ENSPREP00000025573	Uncharacterized protein.	FERM domain containing 6.	0.788
ENSPREP00000003616	gnb1	ENSPREP00000003616	ENSPREP00000015702	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.781
ENSPREP00000003616	gnb3	ENSPREP00000003616	ENSPREP00000018400	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.781
ENSPREP00000003616	gnb5	ENSPREP00000003616	ENSPREP00000021759	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta 5a.	0.781
GNB4	ENSPREP00000003616	ENSPREP00000022213	ENSPREP00000003616	G protein subunit beta 4.	Uncharacterized protein.	0.781
GNB4	LOC103462170	ENSPREP00000022213	ENSPREP00000007905	G protein subunit beta 4.	Guanine nucleotide binding protein (G protein), beta 5b.	0.449
GNB4	frmd1	ENSPREP00000022213	ENSPREP00000033562	G protein subunit beta 4.	FERM domain-containing protein.	0.535
GNB4	frmd6	ENSPREP00000022213	ENSPREP00000025573	G protein subunit beta 4.	FERM domain containing 6.	0.535
GNB4	gnb5	ENSPREP00000022213	ENSPREP00000021759	G protein subunit beta 4.	Guanine nucleotide binding protein (G protein), beta 5a.	0.449
LOC103462170	ENSPREP00000003616	ENSPREP00000007905	ENSPREP00000003616	Guanine nucleotide binding protein (G protein), beta 5b.	Uncharacterized protein.	0.781
LOC103462170	GNB4	ENSPREP00000007905	ENSPREP00000022213	Guanine nucleotide binding protein (G protein), beta 5b.	G protein subunit beta 4.	0.449
LOC103462170	LOC103464516	ENSPREP00000007905	ENSPREP00000006363	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.449
LOC103462170	LOC103475780	ENSPREP00000007905	ENSPREP00000033242	Guanine nucleotide binding protein (G protein), beta 5b.	WD_REPEATS_REGION domain-containing protein.	0.449
LOC103462170	gnb1	ENSPREP00000007905	ENSPREP00000015702	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.449