STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462593Tetraspanin. (245 aa)    
Predicted Functional Partners:
abcg8
ATP-binding cassette, sub-family G (WHITE), member 8.
    
   0.660
gadd45gip1
Growth arrest and DNA-damage-inducible, gamma interacting protein 1.
      
 0.604
siva1
SIVA1, apoptosis-inducing factor.
      
 0.604
rcn2
Reticulocalbin 2.
   
  
 0.568
tm7sf3
Transmembrane 7 superfamily member 3.
      
 0.503
LOC103468044
Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.
    
 
 0.501
LOC103464693
Tetraspanin.
    
 
 0.501
phf21a
PHD finger protein 21Ab.
      
 0.442
LOC103464408
Immunoglobulin superfamily, member 8.
    
 
 0.428
LOC103473017
Apolipoprotein Ea.
      
 0.408
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.