STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000003635Collagen, type I, alpha 2. (1282 aa)    
Predicted Functional Partners:
ENSPREP00000009031
LAM_G_DOMAIN domain-containing protein.
 
 
 
  0.713
ENSPREP00000000054
LAM_G_DOMAIN domain-containing protein.
 
 
 
  0.693
dusp5
Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
    
 0.652
crtap
Cartilage associated protein.
    
 0.650
p3h1
Prolyl 3-hydroxylase 1.
    
 0.642
myb
V-myb avian myeloblastosis viral oncogene homolog.
      
 0.639
igfals
Insulin-like growth factor binding protein, acid labile subunit.
   
 0.619
LOC103463625
Notch receptor 2.
    
 0.577
col6a1
Collagen, type VI, alpha 1.
  
0.574
nup133
Nucleoporin 133.
     
 0.562
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.