STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000003635Collagen, type I, alpha 2. (1282 aa)    
Predicted Functional Partners:
ENSPREP00000009031
LAM_G_DOMAIN domain-containing protein.
 
 
 
  0.705
ENSPREP00000000054
LAM_G_DOMAIN domain-containing protein.
 
 
 
  0.684
hoxc13
Homeobox C13a.
      
 0.499
crtap
Cartilage associated protein.
    
 0.457
LOC103464342
Complement C1q C chain.
  
 
0.453
p3h1
Prolyl 3-hydroxylase 1.
    
 0.451
ENSPREP00000014997
Collagen, type I, alpha 1b.
  
 
0.442
ENSPREP00000011135
Uncharacterized protein.
  
 
0.436
LOC103467632
Collagen, type II, alpha 1a.
  
 
0.431
LOC103468138
Collagen, type I, alpha 1a.
  
 
0.429
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.