STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tssc4Uncharacterized protein. (314 aa)    
Predicted Functional Partners:
znhit2
Zinc finger, HIT-type containing 2.
   
 
 0.982
aar2
AAR2 splicing factor.
    
 
 0.979
eapp
E2f-associated phosphoprotein.
    
 
 0.976
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
    
 
 0.973
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 
 0.973
prpf8
Pre-mRNA processing factor 8.
    
 
 0.971
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.968
ecd
Ecdysoneless homolog (Drosophila).
    
 
 0.967
cd2bp2
CD2 (cytoplasmic tail) binding protein 2.
    
 
 0.967
ENSPREP00000012190
G patch domain containing 1.
    
   0.957
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.