Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ptcd3Pentatricopeptide repeat domain 3. (549 aa)    
Predicted Functional Partners:
mrps31
Mitochondrial ribosomal protein S31.
   
 0.994
chchd1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
    
 0.993
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 0.992
mrps14
Mitochondrial ribosomal protein S14.
    
 0.991
mrps24
Mitochondrial ribosomal protein S24.
    
 0.991
mrps5
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
   
 0.990
mrps7
Mitochondrial ribosomal protein S7.
   
 0.990
mrps22
Mitochondrial ribosomal protein S22.
   
 0.990
Mrps27
Mitochondrial ribosomal protein S27.
   
 0.990
dap3
Death associated protein 3.
   
 0.990
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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