STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475916Zgc:55262; Belongs to the peptidase C2 family. (706 aa)    
Predicted Functional Partners:
cast
Uncharacterized protein.
   
 0.800
LOC103468663
Uncharacterized protein.
   
 
 0.664
LOC103462295
Zgc:153993.
   
 
 0.661
BAX
BCL2 associated X, apoptosis regulator.
     
 0.657
LOC103460031
Uncharacterized protein.
   
 0.635
capns1
Calpain, small subunit 1 b.
   
 0.635
LOC103467158
Uncharacterized protein.
      
 0.519
LOC103467157
Matrix metallopeptidase 9.
      
 0.519
ENSPREP00000021359
Matrix metallopeptidase 9.
      
 0.519
MMP9
Matrix metallopeptidase 9.
      
 0.519
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.