STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462262Anoctamin. (798 aa)    
Predicted Functional Partners:
rsl1d1
Ribosomal L1 domain containing 1.
      
 0.648
eri1
Exoribonuclease 1.
      
 0.620
sepsecs
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis.
      
 0.608
cpsf1
Cleavage and polyadenylation specific factor 1.
      
 0.592
TMEM19
Transmembrane protein 19.
      
 0.586
ENSPREP00000011352
Uncharacterized protein.
      
 0.581
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.580
ENSPREP00000006071
Fin bud initiation factor b.
      
 0.578
ush1c
Usher syndrome 1C.
      
 0.549
saal1
Serum amyloid A-like 1.
      
 0.517
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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