STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479611RAB6B, member RAS oncogene family. (208 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
   
 0.878
rgp1
GP1 homolog, RAB6A GEF complex partner 1.
    
 0.836
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.831
arfrp1
ADP-ribosylation factor related protein 1.
    
 0.826
vps52
VPS52 subunit of GARP complex.
    
 0.816
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.810
vps53
VPS53 subunit of GARP complex.
    
 0.794
GCC2
GRIP domain-containing protein.
    
 0.775
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
   
 0.771
ENSPREP00000030890
Uncharacterized protein.
   
 0.771
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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