STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462261Plakophilin 3b. (763 aa)    
Predicted Functional Partners:
LOC103465321
Junction plakoglobin a.
   
 0.782
perp
P53 apoptosis effector related to pmp22.
   
 
 0.765
LOC103479638
Desmocollin 2 like; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.747
LOC103479563
Uncharacterized protein.
   
 0.714
LOC103464197
Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 0.669
LOC103464198
Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 0.669
pgghg
Protein-glucosylgalactosylhydroxylysine glucosidase.
      
 0.661
LOC103472762
Ash1 (absent, small, or homeotic)-like (Drosophila).
      
 0.599
LOC103472282
Uncharacterized protein.
   
 0.522
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.522
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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