STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc59Coiled-coil domain containing 59. (253 aa)    
Predicted Functional Partners:
ttf1
Uncharacterized protein.
   
 
  0.966
ENSPREP00000031846
Cyclin D binding myb-like transcription factor 1.
   
 
  0.828
LOC103470872
Ribosomal protein L26.
   
   0.797
RPL36A
Ribosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family.
    
   0.743
llph
LLP homolog, long-term synaptic facilitation factor.
   
    0.742
rpap2
RNA polymerase II associated protein 2.
      
 0.722
gtf2h3
General transcription factor IIH, polypeptide 3.
      
 0.662
rpl3l
Ribosomal protein L3 like.
    
   0.648
LOC103468999
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
   0.648
mrpl24
Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.
   
   0.620
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.