STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmtc2Transmembrane O-mannosyltransferase targeting cadherins 2a. (634 aa)    
Predicted Functional Partners:
ENSPREP00000003742
Uncharacterized protein.
 
      0.900
ints1
Integrator complex subunit 1.
    
 0.844
ints11
Integrator complex subunit 11.
   
 0.829
ints13
Integrator complex subunit 13.
   
 0.815
ints10
Integrator complex subunit 10.
   
 0.812
ints5
Integrator complex subunit 5.
    
 0.801
ints9
Integrator complex subunit 9.
   
 0.777
ints3
Integrator complex subunit 3.
    
 0.736
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.731
ints12
Integrator complex subunit 12.
    
 0.707
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.