STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103477109Polycystic kidney disease 2-like 1. (756 aa)    
Predicted Functional Partners:
pkd1
Polycystic kidney disease 1a.
   
 0.958
LOC103460357
Uncharacterized protein.
    
 
 0.794
exoc5
Exocyst complex component 5.
     
 0.736
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.698
ENSPREP00000017652
Urotensin-related peptide 1.
      
 0.674
LOC103464572
Rhodopsin.
     
 0.670
LOC103464571
Rhodopsin.
     
 0.670
exoc4
Exocyst complex component 4.
     
 0.628
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
   
  
 0.622
RHO
Extra-ocular rhodopsin.
     
 0.606
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.