STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srrm1Serine/arginine repetitive matrix 1. (839 aa)    
Predicted Functional Partners:
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.997
LOC103469127
Aly/REF export factor.
   
 0.997
LOC103460651
Cwf21 domain-containing protein.
   
 0.995
LOC103457395
RNA binding motif protein 25b.
   
 0.986
LOC103458235
RNA binding motif protein 25a.
   
 0.986
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 
 0.980
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
    
 0.978
nsrp1
Nuclear speckle splicing regulatory protein 1.
   
 
 0.968
ccdc12
Coiled-coil domain containing 12.
     
 0.966
slu7
SLU7 homolog, splicing factor.
     
 0.963
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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