STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atoh7Atonal bHLH transcription factor 7. (133 aa)    
Predicted Functional Partners:
vsx1
Uncharacterized protein.
   
  
 0.614
VSX2
Visual system homeobox 2.
   
  
 0.558
pou4f2
POU domain protein.
      
 0.531
LOC103457589
Uncharacterized protein.
   
  
 0.512
foxn4
Forkhead box N4.
   
  
 0.493
txnrd2
Thioredoxin reductase 2, tandem duplicate 1.
      
 0.479
afap1
Actin filament associated protein 1.
      
 0.479
LOC103467258
Hairy-related 12.
   
 
 0.477
gap43
Growth associated protein 43.
      
 0.468
LOC103481539
SIX homeobox 3b.
   
  
 0.432
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.