tmco6 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tmco6

Transmembrane and coiled-coil domains 6. (507 aa)

Predicted Functional Partners:

znf511

0.962

lsm5

0.903

kpnb1

0.800

cse1l

0.676

lsm4

0.667

lsm7

0.644

nup153

0.643

lsm6

0.629

mysm1

0.626

NCBP1

0.601

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCBP1	kpnb1	ENSPREP00000008871	ENSPREP00000018146	Nuclear cap binding protein subunit 1.	Karyopherin (importin) beta 1.	0.916
NCBP1	lsm4	ENSPREP00000008871	ENSPREP00000016701	Nuclear cap binding protein subunit 1.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.844
NCBP1	lsm5	ENSPREP00000008871	ENSPREP00000033135	Nuclear cap binding protein subunit 1.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.733
NCBP1	lsm6	ENSPREP00000008871	ENSPREP00000034316	Nuclear cap binding protein subunit 1.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.663
NCBP1	lsm7	ENSPREP00000008871	ENSPREP00000024760	Nuclear cap binding protein subunit 1.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.661
NCBP1	nup153	ENSPREP00000008871	ENSPREP00000010926	Nuclear cap binding protein subunit 1.	Nucleoporin 153.	0.893
NCBP1	tmco6	ENSPREP00000008871	ENSPREP00000003815	Nuclear cap binding protein subunit 1.	Transmembrane and coiled-coil domains 6.	0.601
cse1l	kpnb1	ENSPREP00000013359	ENSPREP00000018146	CSE1 chromosome segregation 1-like (yeast).	Karyopherin (importin) beta 1.	0.920
cse1l	nup153	ENSPREP00000013359	ENSPREP00000010926	CSE1 chromosome segregation 1-like (yeast).	Nucleoporin 153.	0.723
cse1l	tmco6	ENSPREP00000013359	ENSPREP00000003815	CSE1 chromosome segregation 1-like (yeast).	Transmembrane and coiled-coil domains 6.	0.676
kpnb1	NCBP1	ENSPREP00000018146	ENSPREP00000008871	Karyopherin (importin) beta 1.	Nuclear cap binding protein subunit 1.	0.916
kpnb1	cse1l	ENSPREP00000018146	ENSPREP00000013359	Karyopherin (importin) beta 1.	CSE1 chromosome segregation 1-like (yeast).	0.920
kpnb1	mysm1	ENSPREP00000018146	ENSPREP00000031373	Karyopherin (importin) beta 1.	Myb-like, SWIRM and MPN domains 1.	0.432
kpnb1	nup153	ENSPREP00000018146	ENSPREP00000010926	Karyopherin (importin) beta 1.	Nucleoporin 153.	0.985
kpnb1	tmco6	ENSPREP00000018146	ENSPREP00000003815	Karyopherin (importin) beta 1.	Transmembrane and coiled-coil domains 6.	0.800
lsm4	NCBP1	ENSPREP00000016701	ENSPREP00000008871	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nuclear cap binding protein subunit 1.	0.844
lsm4	lsm5	ENSPREP00000016701	ENSPREP00000033135	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
lsm4	lsm6	ENSPREP00000016701	ENSPREP00000034316	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm4	lsm7	ENSPREP00000016701	ENSPREP00000024760	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm4	tmco6	ENSPREP00000016701	ENSPREP00000003815	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Transmembrane and coiled-coil domains 6.	0.667