Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbxo38F-box protein 38. (1208 aa)    
Predicted Functional Partners:
cul1
Cullin 1b; Belongs to the cullin family.
    
 
 0.970
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
   
 
 0.958
tdrp
Si:ch211-225h24.2.
      
 0.922
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.910
klhl22
Kelch-like family member 22.
   
  
 0.794
klhl8
Kelch-like family member 8.
   
  
 0.762
ENSPREP00000004405
Zgc:172182.
      
 0.758
LOC103479391
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.732
LOC103474461
Cullin 3; Belongs to the cullin family.
    
 
 0.732
mcmbp
Minichromosome maintenance complex binding protein.
      
 0.730
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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