STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kdm5cLysine (K)-specific demethylase 5C. (1580 aa)    
Predicted Functional Partners:
ATP6
ATP synthase subunit a.
  
 0.846
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 0.846
atp5f1d
ATP synthase F1 subunit delta.
  
 0.846
atp5f1c
ATP synthase subunit gamma.
  
 0.846
phf12
PHD finger protein 12b.
    
 
 0.829
gatad1
GATA zinc finger domain containing 1.
    
 
 0.797
ENSPREP00000032744
Retinoblastoma 1.
    
 
 0.792
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.770
LOC103470111
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.770
eed
Embryonic ectoderm development.
   
 0.730
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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