ENSPREP00000003851 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000003851

Uncharacterized protein. (491 aa)

Predicted Functional Partners:

fau

0.790

LOC103461037

0.577

skp1

0.530

LOC103475981

0.486

LOC103478889

0.486

gle1

0.475

asf1b

0.427

LOC103468786

0.427

commd4

0.423

rps15a

0.416

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000003851	LOC103461037	ENSPREP00000003851	ENSPREP00000019992	Uncharacterized protein.	RAN binding protein 2.	0.577
ENSPREP00000003851	LOC103468786	ENSPREP00000003851	ENSPREP00000006156	Uncharacterized protein.	Anti-silencing function 1Ba histone chaperone.	0.427
ENSPREP00000003851	LOC103475981	ENSPREP00000003851	ENSPREP00000006594	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.486
ENSPREP00000003851	LOC103478889	ENSPREP00000003851	ENSPREP00000032459	Uncharacterized protein.	NEDD8 ubiquitin like modifier.	0.486
ENSPREP00000003851	asf1b	ENSPREP00000003851	ENSPREP00000000446	Uncharacterized protein.	Anti-silencing function 1Ba histone chaperone.	0.427
ENSPREP00000003851	commd4	ENSPREP00000003851	ENSPREP00000014300	Uncharacterized protein.	COMM domain containing 4.	0.423
ENSPREP00000003851	fau	ENSPREP00000003851	ENSPREP00000022382	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.790
ENSPREP00000003851	gle1	ENSPREP00000003851	ENSPREP00000005552	Uncharacterized protein.	GLE1 RNA export mediator.	0.475
ENSPREP00000003851	rps15a	ENSPREP00000003851	ENSPREP00000000664	Uncharacterized protein.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.416
ENSPREP00000003851	skp1	ENSPREP00000003851	ENSPREP00000007574	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.530
LOC103461037	ENSPREP00000003851	ENSPREP00000019992	ENSPREP00000003851	RAN binding protein 2.	Uncharacterized protein.	0.577
LOC103461037	gle1	ENSPREP00000019992	ENSPREP00000005552	RAN binding protein 2.	GLE1 RNA export mediator.	0.972
LOC103468786	ENSPREP00000003851	ENSPREP00000006156	ENSPREP00000003851	Anti-silencing function 1Ba histone chaperone.	Uncharacterized protein.	0.427
LOC103475981	ENSPREP00000003851	ENSPREP00000006594	ENSPREP00000003851	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.486
LOC103475981	commd4	ENSPREP00000006594	ENSPREP00000014300	Ubiquitin-like domain-containing protein.	COMM domain containing 4.	0.660
LOC103475981	fau	ENSPREP00000006594	ENSPREP00000022382	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.834
LOC103475981	rps15a	ENSPREP00000006594	ENSPREP00000000664	Ubiquitin-like domain-containing protein.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.726
LOC103475981	skp1	ENSPREP00000006594	ENSPREP00000007574	Ubiquitin-like domain-containing protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.941
LOC103478889	ENSPREP00000003851	ENSPREP00000032459	ENSPREP00000003851	NEDD8 ubiquitin like modifier.	Uncharacterized protein.	0.486
LOC103478889	commd4	ENSPREP00000032459	ENSPREP00000014300	NEDD8 ubiquitin like modifier.	COMM domain containing 4.	0.660