LOC103457524 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103457524

Uncharacterized protein. (734 aa)

Predicted Functional Partners:

cul1

0.797

skp1

0.762

ENSPREP00000004417

0.671

fau

0.608

LOC103461037

0.549

commd4

0.486

ccdc22

0.480

uba52

0.470

LOC103479391

0.467

LOC103474461

0.467

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004417	LOC103457524	ENSPREP00000004417	ENSPREP00000003861	Uncharacterized protein.	Uncharacterized protein.	0.671
ENSPREP00000004417	LOC103474461	ENSPREP00000004417	ENSPREP00000027846	Uncharacterized protein.	Cullin 3; Belongs to the cullin family.	0.557
ENSPREP00000004417	LOC103479391	ENSPREP00000004417	ENSPREP00000024968	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.557
ENSPREP00000004417	cul1	ENSPREP00000004417	ENSPREP00000016001	Uncharacterized protein.	Cullin 1b; Belongs to the cullin family.	0.946
ENSPREP00000004417	skp1	ENSPREP00000004417	ENSPREP00000007574	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.515
LOC103457524	ENSPREP00000004417	ENSPREP00000003861	ENSPREP00000004417	Uncharacterized protein.	Uncharacterized protein.	0.671
LOC103457524	LOC103461037	ENSPREP00000003861	ENSPREP00000019992	Uncharacterized protein.	RAN binding protein 2.	0.549
LOC103457524	LOC103474461	ENSPREP00000003861	ENSPREP00000027846	Uncharacterized protein.	Cullin 3; Belongs to the cullin family.	0.467
LOC103457524	LOC103479391	ENSPREP00000003861	ENSPREP00000024968	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.467
LOC103457524	ccdc22	ENSPREP00000003861	ENSPREP00000013388	Uncharacterized protein.	Coiled-coil domain containing 22.	0.480
LOC103457524	commd4	ENSPREP00000003861	ENSPREP00000014300	Uncharacterized protein.	COMM domain containing 4.	0.486
LOC103457524	cul1	ENSPREP00000003861	ENSPREP00000016001	Uncharacterized protein.	Cullin 1b; Belongs to the cullin family.	0.797
LOC103457524	fau	ENSPREP00000003861	ENSPREP00000022382	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.608
LOC103457524	skp1	ENSPREP00000003861	ENSPREP00000007574	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.762
LOC103457524	uba52	ENSPREP00000003861	ENSPREP00000016516	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.470
LOC103461037	LOC103457524	ENSPREP00000019992	ENSPREP00000003861	RAN binding protein 2.	Uncharacterized protein.	0.549
LOC103461037	fau	ENSPREP00000019992	ENSPREP00000022382	RAN binding protein 2.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.450
LOC103461037	skp1	ENSPREP00000019992	ENSPREP00000007574	RAN binding protein 2.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.410
LOC103461037	uba52	ENSPREP00000019992	ENSPREP00000016516	RAN binding protein 2.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.470
LOC103474461	ENSPREP00000004417	ENSPREP00000027846	ENSPREP00000004417	Cullin 3; Belongs to the cullin family.	Uncharacterized protein.	0.557