Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nebNebulin. (6138 aa)    
Predicted Functional Partners:
myot
Myotilin.
   
  
 0.954
LOC103461533
Myosin, light chain 1, alkali; skeletal, fast.
   
 
 0.935
cs
Citrate synthase; Belongs to the citrate synthase family.
      
 0.906
MYOZ1
Myozenin 1.
   
  
 0.903
tmod4
Tropomodulin 4 (muscle).
   
 0.838
tmod3
Tropomodulin 2.
   
 0.818
tmod1
Tropomodulin 1.
   
 0.786
mylpf
Myosin light chain, phosphorylatable, fast skeletal muscle a.
   
 
 0.779
LOC103481362
Myosin light chain, phosphorylatable, fast skeletal muscle b.
   
 
 0.779
tcap
Titin-cap (telethonin).
   
 
 0.712
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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