STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MBNL1Muscleblind like splicing regulator 1. (391 aa)    
Predicted Functional Partners:
LOC103468782
GIPC PDZ domain containing family, member 1.
      
 0.580
lrp12
Low density lipoprotein receptor-related protein 12.
      
 0.580
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
  
 0.491
LOC103464518
TAR DNA binding protein.
   
 
 0.448
tardbp
TAR DNA binding protein, like.
   
 
 0.448
QKI
QKI, KH domain containing, RNA binding 2.
   
 
 0.416
LOC103461055
Fragile X mental retardation 1.
      
 0.407
fmr1
Fragile X mental retardation 1.
      
 0.406
LOC103478782
SAC domain-containing protein.
      
 0.406
cnbp
CCHC-type zinc finger, nucleic acid binding protein a.
   
 
 0.404
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.