STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103472590Uncharacterized protein. (1510 aa)    
Predicted Functional Partners:
LOC103460961
Integrin beta.
   
 0.650
itgb4
Integrin, beta 4.
   
 0.650
tspan11
Tetraspanin.
     
 0.545
LOC103462706
Tetraspanin.
     
 0.545
lamb3
Uncharacterized protein.
   
 0.526
ppib
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.512
LOC103461657
Uncharacterized protein.
  
0.508
col6a2
Collagen, type VI, alpha 2.
  
0.508
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
 0.507
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
 0.507
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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