STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467710PDZ domain containing 4. (925 aa)    
Predicted Functional Partners:
cep131
Centrosomal protein 131.
    
 
 0.667
apip
Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.
    
   0.625
cdkl1
Cyclin-dependent kinase-like 1 (CDC2-related kinase); Belongs to the protein kinase superfamily.
      
 0.554
Marveld1
MARVEL domain containing 1.
      
 0.503
taf3
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.
   
    0.502
pipox
Pipecolic acid oxidase.
      
 0.445
lnx2
Ligand of numb-protein X 2a.
      
 0.440
CDKL5
Cyclin dependent kinase like 5.
      
 0.408
LOC103462031
Cyclin-dependent kinase-like 5.
      
 0.408
LOC103459407
Ras association domain family member 8b.
   
  
 0.407
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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