Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
otud4OTU domain-containing protein. (877 aa)    
Predicted Functional Partners:
rc3h1
Ring finger and CCCH-type domains 1b.
   
   0.797
ubb
Uncharacterized protein.
    
 0.767
LOC103473189
Uncharacterized protein.
    
 0.767
rc3h2
Ring finger and CCCH-type domains 2.
   
   0.746
znf598
Zinc finger protein 598.
    
 
 0.712
ENSPREP00000009964
Ubiquitin-like domain-containing protein.
    
 0.699
rnf216
Ring finger protein 216.
     
 0.634
otud3
OTU deubiquitinase 3.
    
 
 0.626
kiaa2013
Si:dkeyp-104h9.5.
   
  
 0.613
usp48
Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family.
   
 
 0.609
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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