LOC103466284 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103466284

Olfactomedin-like domain-containing protein. (462 aa)

Predicted Functional Partners:

ENSPREP00000019657

0.617

lrig1

0.605

mex3a

0.587

LGR5

0.507

lgr4

0.507

PCGF2

0.483

ENSPREP00000022294

0.483

LOC103471920

0.469

ENSPREP00000018897

0.449

LOC103481888

0.449

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000018897	ENSPREP00000019657	ENSPREP00000018897	ENSPREP00000019657	Noggin; Belongs to the noggin family.	Uncharacterized protein.	0.562
ENSPREP00000018897	LGR5	ENSPREP00000018897	ENSPREP00000008461	Noggin; Belongs to the noggin family.	Leucine rich repeat containing G protein-coupled receptor 5.	0.487
ENSPREP00000018897	LOC103466284	ENSPREP00000018897	ENSPREP00000003947	Noggin; Belongs to the noggin family.	Olfactomedin-like domain-containing protein.	0.449
ENSPREP00000018897	LOC103481888	ENSPREP00000018897	ENSPREP00000023598	Noggin; Belongs to the noggin family.	Noggin; Belongs to the noggin family.	0.902
ENSPREP00000018897	lgr4	ENSPREP00000018897	ENSPREP00000033484	Noggin; Belongs to the noggin family.	Leucine-rich repeat containing G protein-coupled receptor 4.	0.487
ENSPREP00000019657	ENSPREP00000018897	ENSPREP00000019657	ENSPREP00000018897	Uncharacterized protein.	Noggin; Belongs to the noggin family.	0.562
ENSPREP00000019657	LGR5	ENSPREP00000019657	ENSPREP00000008461	Uncharacterized protein.	Leucine rich repeat containing G protein-coupled receptor 5.	0.595
ENSPREP00000019657	LOC103466284	ENSPREP00000019657	ENSPREP00000003947	Uncharacterized protein.	Olfactomedin-like domain-containing protein.	0.617
ENSPREP00000019657	LOC103481888	ENSPREP00000019657	ENSPREP00000023598	Uncharacterized protein.	Noggin; Belongs to the noggin family.	0.562
ENSPREP00000019657	lgr4	ENSPREP00000019657	ENSPREP00000033484	Uncharacterized protein.	Leucine-rich repeat containing G protein-coupled receptor 4.	0.595
ENSPREP00000022294	LOC103466284	ENSPREP00000022294	ENSPREP00000003947	Bmi1 polycomb ring finger oncogene 1a.	Olfactomedin-like domain-containing protein.	0.483
ENSPREP00000022294	PCGF2	ENSPREP00000022294	ENSPREP00000005389	Bmi1 polycomb ring finger oncogene 1a.	Polycomb group ring finger 2.	0.552
ENSPREP00000022294	lrig1	ENSPREP00000022294	ENSPREP00000027120	Bmi1 polycomb ring finger oncogene 1a.	Leucine-rich repeats and immunoglobulin-like domains 1.	0.619
LGR5	ENSPREP00000018897	ENSPREP00000008461	ENSPREP00000018897	Leucine rich repeat containing G protein-coupled receptor 5.	Noggin; Belongs to the noggin family.	0.487
LGR5	ENSPREP00000019657	ENSPREP00000008461	ENSPREP00000019657	Leucine rich repeat containing G protein-coupled receptor 5.	Uncharacterized protein.	0.595
LGR5	LOC103466284	ENSPREP00000008461	ENSPREP00000003947	Leucine rich repeat containing G protein-coupled receptor 5.	Olfactomedin-like domain-containing protein.	0.507
LGR5	LOC103481888	ENSPREP00000008461	ENSPREP00000023598	Leucine rich repeat containing G protein-coupled receptor 5.	Noggin; Belongs to the noggin family.	0.487
LOC103466284	ENSPREP00000018897	ENSPREP00000003947	ENSPREP00000018897	Olfactomedin-like domain-containing protein.	Noggin; Belongs to the noggin family.	0.449
LOC103466284	ENSPREP00000019657	ENSPREP00000003947	ENSPREP00000019657	Olfactomedin-like domain-containing protein.	Uncharacterized protein.	0.617
LOC103466284	ENSPREP00000022294	ENSPREP00000003947	ENSPREP00000022294	Olfactomedin-like domain-containing protein.	Bmi1 polycomb ring finger oncogene 1a.	0.483