tes protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

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Co-expression

Experiments

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[Homology]

Score

tes

Testis derived transcript (3 LIM domains). (595 aa)

Predicted Functional Partners:

thada

0.660

LOC103470302

0.660

sptan1

0.659

ENSPREP00000004733

0.658

zyx

0.658

tnfaip8l2

0.652

ENSPREP00000005826

0.587

ENSPREP00000023386

0.587

ENSPREP00000023411

0.587

EVL

0.587

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004733	ENSPREP00000005826	ENSPREP00000004733	ENSPREP00000005826	Uncharacterized protein.	Vasodilator stimulated phosphoprotein b.	0.683
ENSPREP00000004733	ENSPREP00000023386	ENSPREP00000004733	ENSPREP00000023386	Uncharacterized protein.	VASP_tetra domain-containing protein.	0.683
ENSPREP00000004733	ENSPREP00000023411	ENSPREP00000004733	ENSPREP00000023411	Uncharacterized protein.	WH1 domain-containing protein.	0.683
ENSPREP00000004733	EVL	ENSPREP00000004733	ENSPREP00000024113	Uncharacterized protein.	Enah/Vasp-like.	0.683
ENSPREP00000004733	tes	ENSPREP00000004733	ENSPREP00000003951	Uncharacterized protein.	Testis derived transcript (3 LIM domains).	0.658
ENSPREP00000004733	zyx	ENSPREP00000004733	ENSPREP00000015382	Uncharacterized protein.	Zyxin.	0.902
ENSPREP00000005826	ENSPREP00000004733	ENSPREP00000005826	ENSPREP00000004733	Vasodilator stimulated phosphoprotein b.	Uncharacterized protein.	0.683
ENSPREP00000005826	tes	ENSPREP00000005826	ENSPREP00000003951	Vasodilator stimulated phosphoprotein b.	Testis derived transcript (3 LIM domains).	0.587
ENSPREP00000005826	zyx	ENSPREP00000005826	ENSPREP00000015382	Vasodilator stimulated phosphoprotein b.	Zyxin.	0.683
ENSPREP00000023386	ENSPREP00000004733	ENSPREP00000023386	ENSPREP00000004733	VASP_tetra domain-containing protein.	Uncharacterized protein.	0.683
ENSPREP00000023386	tes	ENSPREP00000023386	ENSPREP00000003951	VASP_tetra domain-containing protein.	Testis derived transcript (3 LIM domains).	0.587
ENSPREP00000023386	zyx	ENSPREP00000023386	ENSPREP00000015382	VASP_tetra domain-containing protein.	Zyxin.	0.683
ENSPREP00000023411	ENSPREP00000004733	ENSPREP00000023411	ENSPREP00000004733	WH1 domain-containing protein.	Uncharacterized protein.	0.683
ENSPREP00000023411	tes	ENSPREP00000023411	ENSPREP00000003951	WH1 domain-containing protein.	Testis derived transcript (3 LIM domains).	0.587
ENSPREP00000023411	zyx	ENSPREP00000023411	ENSPREP00000015382	WH1 domain-containing protein.	Zyxin.	0.683
EVL	ENSPREP00000004733	ENSPREP00000024113	ENSPREP00000004733	Enah/Vasp-like.	Uncharacterized protein.	0.683
EVL	tes	ENSPREP00000024113	ENSPREP00000003951	Enah/Vasp-like.	Testis derived transcript (3 LIM domains).	0.587
EVL	zyx	ENSPREP00000024113	ENSPREP00000015382	Enah/Vasp-like.	Zyxin.	0.683
LOC103470302	tes	ENSPREP00000032494	ENSPREP00000003951	Si:ch211-225b11.4.	Testis derived transcript (3 LIM domains).	0.660
sptan1	tes	ENSPREP00000010216	ENSPREP00000003951	Spectrin alpha, non-erythrocytic 1.	Testis derived transcript (3 LIM domains).	0.659